Plant chromatin state database
WebOct 10, 2024 · We constructed a Plant Chromatin State Database (PCSD, http://systemsbiology.cau.edu.cn/chromstates) to integrate detailed information about … WebSep 2, 2024 · In vertebrate genomes, chromosomes are demarcated into distinct topologically associated domains (TADs), a topological architecture of higher order chromatin structure (Phillips-Cremins and Corces 2013; Ghirlando and Felsenfeld 2016 ).
Plant chromatin state database
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Webchromatin states page (Supplemental Figure 2C), after selecting tissues and cultivars, users could search gene ID or genome locus conveniently, and obtain components of the chromatin Web1 hour ago · The conserved family of Transcription Intermediary Factors (TIF1) proteins consists of key transcriptional regulators that control transcription of target genes by modulating chromatin state. Unlike mammals that have four TIF1 members, Drosophila only encodes one member of the family, Bonus. Bonus has been implicated in embryonic …
WebChoose Species >>> About Plant Chromatin State Database Chromatin is a genome-organizing platform, regulating gene expression, cell division, and differentiation. Genome … WebMar 24, 2024 · To elucidate the general correlations between EMS-induced SNPs and these chromatin structure-related modifications, the rice epigenetic modification data of Nipponbare from multiple tissues and experiments were downloaded from the Plant Chromatin State Database (PCSD) (Zhang et al., 2012; Liu et al., 2024), including nine …
WebJan 27, 2024 · Using Arabidopsis as a model, we show that epimutation hotspots are indexed by a specific set of chromatin states that map to subregions of gene body methylation genes. Although these regions...
WebOct 31, 2024 · To provide a comprehensive chromatin accessibility data analysis platform for plants, we developed plant chromatin accessibility database (PlantCADB). It compiled … daniels main role on the wire nyt crosswordWebJan 1, 2024 · As shown in Table 1, six databases have collected and organized more than ten thousands of public datasets including histone modification (ChIP-seq), DNA methylation on 5-methylcytosine and N6 -methyladenine (BS-seq, meDIP-seq, SMRT-seq), and chromatin states (ATAC-seq, DNase-seq, MNase-seq and FAIRE-seq) [19], [20], [21], … birth date of nfl player jarvis landrybirth date of nfl player davante adamsWebJan 1, 2024 · In summary, we have identified chromatin states in plants and present a plant chromatin state database, PCSD (http://systemsbiology.cau.edu.cn/chromstates). In … daniel sloss stand up specialsWebOct 22, 2024 · Keywords: Malus domestica, co-expression network, functional module, chromatin state, fruit ripening, anthocyanin biosynthesis. Citation: Da L, Liu Y, Yang J, Tian T, She J, Ma X, Xu W and Su Z (2024) AppleMDO: A Multi-Dimensional Omics Database for Apple Co-Expression Networks and Chromatin States. Front. Plant Sci. 10:1333. doi: … birth date of nfl player keenan allenWebA comprehensive database that lists the flora of Illinois including plants native to the Prairie State as well as those that have recently found a home in Illinois natural areas. … daniels making healthcare saferWebJan 19, 2024 · The H3K27ac, H3K4me3, H3K27me3 ChIP-seq , and DNase-seq analyzed data were downloaded from Plant Chromatin State Database (PCSD) . The raw sequencing … birth date of nfl player myles garrett